• Skip to main content
AlgaeBarn

AlgaeBarn

Marine Aquariums Made Easy!

    • Shop See All
      • Ultimate Packs See All
      • Ultimate Refugium Starter
      • Clam Keeper Kits
      • Ultimate Ecopack
      • Mandarin Feeder Kit
      • Hair Algae Killer Kit
      • See All Ultimate Packs
      • Live Foods See All
      • Copepods
        • Ecopods
        • 5280 Pods
        • Galaxy Pods
        • Poseidon's Feast
        • Tisbe Pods
        • Tig Pods
      • Food Combos
        • Ecopods & Phyto
        • Galaxy Pods & Phyto
        • Poseidon's & Phyto
        • Tig Pods & Phyto
        • Tisbe Pods & Phyto
      • Phytoplankton
        • Oceanmagik
      • Brine Shrimp
        • Simple Brine
        • Nano Brine Shrimp
        • Premium Brine Shrimp Eggs
        • Magnetic Brine Shrimp Eggs
      • Most Popular Products
        • Galaxy Pods 5 Species Copepod Blend

          Galaxy Pods

          $66 – $229
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • Ecopods 4 Pack Special

          $99
          Shop Now
        • Galaxy Pods & Phyto Combo

          $80
          Shop Now
        • 5280 Pods

          $45
          Shop Now
      • Macroalgae See All
      • Clean Macro Series
        • Clean Chaeto
        • Clean Sea Lettuce
        • Clean Green Ogo
        • Clean Mocha Ogo
        • Clean Mocha Spike Sphere
        • Pom Pom
        • Red Ogo
        • Red Spike Sphere
        • Red Spaghetti
        • Red Mangrove
      • Premium Rare Macro
        • Leafy Ogo
        • Blue Hypnea
        • Dragon's Tongue
        • Thick Ogo
      • Most Popular Products
        • Clean Chaeto

          $40 – $125
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • Clean Sea Lettuce

          $30 – $95
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • Red Ogo

          $30 – $80
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • Red Mangrove

          $13
          Shop Now
      • Captive Bred Fish See All
      • Gobies
        • Green Mandarin
        • Court Jester Goby
        • Watchman Goby
        • White Spotted Goby
      • AngelFish
        • Biota Coral Beauty
        • Maculosus Angel
        • Majestic Angel
        • Swallowtail Angel
      • Tangs
        • Yellow Tang
        • Blue Tang
      • More Species
        • Grammas
        • FileFish
        • Blennies
        • Damsel
        • ClownFish
        • RabbitFish
      • Most Popular Products
        • Blue Mandarin

          BIOTA Green Mandarin

          $99 – $209
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • ORA Neon Goby

          $35
          Notify Me When in Stock
        • Captive Bred Yellow Tangs by BIOTA

          BIOTA Yellow Tang

          $250
          Shop Now
        • ORA Premium Picasso

          $145 – $300
          Shop Now This product has multiple variants. The options may be chosen on the product page
      • Captive Bred Invertebrates See All
      • Clams
        • Ora Derasa Clam
        • Squamosa Clam
        • Ora Gigas Clam
        • Ora Maxima Clam
        • Ora Hippopus Clam
      • Shrimp
        • Ora Peppermint Shrimp
        • Harlequin Shrimp
      • Snails
        • Cerith Snails
        • Trochus Snail
        • Nassarius Snails
      • Urchins
        • Ora Tuxedo Urchin
        • Ora Pincushion Urchin
      • Most Popular Products
        • Animated gif of peppermint shrimp

          Peppermint Shrimp

          $49 – $119
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • 10 Cerith Snails

          Cerith Snail

          $25 – $79
          Notify Me When in Stock This product has multiple variants. The options may be chosen on the product page
        • pincushion urchin lytechinus variegatus reef safe and captive bred by ora for sale at algaebarn

          Pincushion Urchin

          $29 – $99
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • Gold Maxima Clam Bed

          ORA Maxima Clam

          $80 – $150
          Shop Now This product has multiple variants. The options may be chosen on the product page
      • Corals See All
      • LPS Corals
        • Biota Pearl Bubble
        • ORA Pearl Bubble
        • ORA Marshall Island Goniopora
        • ORA Marshall Island Hammer
      • SPS Corals
        • ORA Pearlberry Acropora
        • ORA Micronesian Imperial Acropora
        • ORA Turquoise Acropora
        • ORA Micronesian Yellow Porites
      • Soft Corals
        • BIOTA White Polyp Toadstool
        • ORA Long Polyp Leather Coral
        • ORA Silver Xenia
        • ORA Pulsing Xenia
      • Frag Packs
      • Most Popular Products
        • Biota Pearl Bubble Coral

          $65
          Notify Me When in Stock
        • ORA Pearlberry Acropora

          $290
          Notify Me When in Stock
        • BIOTA White Polyp Toadstool

          $70
          Shop Now
      • Additives & Bacteria See All
      • Live Cultures & Bacteria
        • Turbostart 900 Saltwater
        • Aquarium Cycle Kit
        • Coralline Algae
        • PNS Yellosno
        • PNS Probio™
      • Additives & Chemicals
        • Nitrocycle
        • Clarifier
        • Fritz A.C.C.R
        • Fritz RPM Salt
      • Most Popular Products
        • Mandarin Feeder Kit™

          $66
          Shop Now
        • Coralline Algae in a Bottle, In Pink or Purple!

          Coralline Algae

          $22 – $44
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • MarinePure 10 Cubes

          2″ Cubes

          $5 – $99
          Notify Me When in Stock This product has multiple variants. The options may be chosen on the product page
        • Ultimate EcoPack

          $100
          Shop Now
      • Aquarium Supplies See All
      • Fuge Lighting
        • AI Fuge 16HD Light
        • Kessil A360X Fuge Light
        • Kessil H160
        • Kessil H80
        • Chaetomax
      • Biomedia
        • Marinepure Gems
        • Marinepure Rocks
        • Marinepure Plate
        • Marinepure Cubes
        • Marinepure Spheres
      • Foods
        • Dragon Roe
        • Simple Brine
        • Can'O Cyclops
        • Benereef™
        • Fresco Cyclops
      • Rock & Sand
        • Dry Rock
        • Clam Rocks
      • Most Popular Products
        • Mandarin Feeder Kit™

          $66
          Shop Now
        • Coralline Algae in a Bottle, In Pink or Purple!

          Coralline Algae

          $22 – $44
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • MarinePure 10 Cubes

          2″ Cubes

          $5 – $99
          Notify Me When in Stock This product has multiple variants. The options may be chosen on the product page
        • Ultimate EcoPack

          $100
          Shop Now
      • CADE Aquariums See All
      • Reef Series
        • CADE REEF 500 S2
        • CADE REEF 600 S2
        • CADE REEF 900 S2
        • CADE REEF 1200 S2
        • CADE REEF 1500 S2
        • CADE REEF 1800 S2
        • CADE REEF 2100 S2
      • Frag Series
        • CADE Frag 600 S2/F
        • CADE Frag 900 S2/F
        • CADE Frag 1200 S2/F
        • CADE Frag 1500 S2/F
      • Peninsula Series
        • CADE Peninsula 1200 S2/P
        • CADE Peninsula 1500 S2/P
        • CADE Peninsula 1800 S2/P
      • Most Popular Products
        • CADE REEF 2100 S2

          $7,225
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • CADE Peninsula 1500 S2/P

          $5,525
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • CADE REEF 1200 S2

          $4,125
          Shop Now This product has multiple variants. The options may be chosen on the product page
        • CADE Frag 900 S2/F

          $3,275
          Shop Now This product has multiple variants. The options may be chosen on the product page
  • Blog
  • Shipping
  • Our Guarantee
  • Help
  • Deals
  • Sign In
  • Cart
You are here: Home / Refugium Education / Bulletproof Refugiums: The Basics

Bulletproof Refugiums: The Basics

by Courtney Tavares

Welcome to our series on building bulletproof refugiums! At AlgaeBarn, it is no surprise that we hear a lot of questions about refugiums. And many of our customers want to know what they can do to improve their current refugiums. In response, we have decided to write a series of articles on creating a solid and resilient refugium system. This article is the first in the series, so we are going over the basics of refugiums. By the end of the series, we hope to have answered all the lingering questions on refugiums!

What exactly is a refugium?

Many reef keepers know that a refugium is a great way to provide a stable source of live food. But the refugium also doubles as a natural filtration method for the entire reef tank system! If we maintain this portion of the reef tank system as diligently as we do with our displays, we will be rewarded! The results of our refugium efforts are cleaner water and more robust corals, fish, and inverts.

So, let’s start off with some of the essentials! What is a refugium and what does it do?

A refugium is just an isolated tank that is contained within a reef tank system. In this tank, we allow and encourage a bunch of different organisms to grow. This helps to enhance the diet of our livestock and it removes unused nutrients from the water column. These waste compounds and excess nutrients would otherwise be used by nuisance algae to thrive. Refugiums are simple to set up in the aquarium system’s sump. If this is not an option, a refugium can be set up adjacent to the system and plumbed together. Adding a refugium to the system gives macroalgae a place to thrive away from hungry herbivores in the main display. This means the macro will have a place to flourish and soak up nutrients from the water column.

Nitrates and phosphates from food and fish waste are used by the algae for nutrition. Once the algae are harvested, the wastes and excess nutrients are then fully removed from the system. A refugium’s main purpose is to export nutrients, but it also serves the display tank. The main display benefits from the regular supply of beneficial microfauna like bacteria and pods. Not only do these tiny critters help clean the system, but they also feed fish and inverts.

Is a refugium necessary for the reef tank?A micro-brittle star in a refugium

While a refugium isn’t required, they save time and money by reducing maintenance time and providing food for the system. A refugium is a small investment with big returns. When it comes to biological filtration, refugiums are the best there is! A refugium is a shelter to preserve the macroalgae that filter the water of nitrates and phosphates. In addition, the refugium will be home to lots of pods, which feed on film algae and detritus.

Although the refugium’s primary purpose is to export nutrients, they provide much more than that! The refugium helps to improve biodiversity of bacteria and pods. These beneficial microfauna and microscopic critters not only clean the tank by eating dead organisms, but they also feed fish and invertebrates in the display.

Some reef keepers choose to grow macroalgae in a bare bottom refugium. Simply put, this is a refugium without a sand substrate. With this method, the goal is to maximize the amount of nutrients exported from the system. While this is simpler and still effective, it is not always the right choice for every reef tank system. A bare bottom refugium used for nitrate and phosphate removal, does not have the benefits of biodiversity and biological filtration. If we truly want our entire reef tank system to export nutrients and do it sustainably, then we will want to build a bulletproof refugium.

Rather than building a bare bottom refugium, an algae reactor may be a better solution. In systems that are dealing with consistently high nitrate and phosphate levels, an algae scrubber packed with AlgaeBarn’s Clean Chaeto in addition to a traditional refugium, is going to produce the best results.

What does the refugium do for the reef tank?

A refugium is more like an extension of the filtration system than it is of a display tank. It functions as a biological filter to remove waste compounds from the water column. In addition, the refugium is a source of natural food for the fish and inverts in the display tank. When we make time and effort to maintain a healthy refugium and do everything we can to make it bulletproof, we are also increasing the overall health of the display.

Nitrate is one of the waste compounds that macroalgae absorbs. In the same manner that nitrate feeds nuisance alga like hair and film algae, macroalgae like AlgaeBarn’s Clean Sea Lettuce also want to soak up that nitrate. By adding fast growing and hardy macroalgae to the refugium, we can outcompete the nuisance algae. The goal is to prevent the growth of undesirable algae by using the macroalgae as a means of nutrient export.

Macroalga do more than only keep the water clean; they also make a great breeding ground for tiny crustaceans like copepods. The macroalgae thrives when the pod population is stable. Pods keep the seaweed’s holdfasts clear of debris and film algae which allows the macro to absorb as much light as possible. Copepods will also consume the decomposing matter produced as older stipes and blades deteriorates, and decays.

Pod populations are easier to boost in the ideal conditions of the refugium. They play the same role in captivity they do in the wild. Copepods are literally the backbone of the aquatic food web. They transport detritus and decaying organic matter into a food source for fish, coral, and inverts.

Refugium ExampleWe can all agree that detritus and organic wastes are not desired in the display tank. However, the refugium is an ideal place for them! A densely planted refugium can help absorb and process excess sediment and detritus. Organic particles that get carried in from the display tank tend to accumulate in the refugium. Debris that sinks to the bottom is eaten by detritivores like copepods. When we build a bulletproof refugium, the microflora and fauna get right to work breaking down the excess nutrients.

When should I add a refugium to my reef tank?

The easiest time to add a refugium is when you are setting up a new system. In fact, CADE Aquarium systems even include space in the sump for the fuge! However, it is never too late to add a refugium! There are many options including hang-on-back (HOB) and even plenty of DIY tutorials if you are a handy type of person.

The typical location for the refugium in your sump. If your sump is too small, an external refugium or a HOB refugium are two options. If space permits, install the hang-on-back refugium on your sump to keep the display tank more accessible. There are even reef keepers who designed their own refugium with plastic Rubbermaid containers and spare aquarium tanks.

The reef tank residents will appreciate even a small increase to the system’s total water capacity. A larger volume of water is beneficial to any system, whether it is new or is well established. A refugium does more than just increase the total volume of the system; it also dramatically increases the ecosystem’s richness. The refugium is a hub for microorganisms of all types.

Final thoughts on the basics of building a bulletproof refugium

We hope this article has helped to explain the basics of refugiums! They are ideal for generating a constant supply of live food for corals, fish, and inverts. Plus, they filter out excess nutrients from the water column which could lead to nuisance algae. And when we refer to our refugiums being bulletproof, it simply means that the overall stability of the reef tank system is improved as a result of a healthy refugium. When we put the same effort and time into maintaining the refugium as we do with our display tanks, we get closer to achieving bulletproof status.

Refugiums also protect the macroalgae from hungry, grazing herbivores. When macro varieties like Clean Sea Lettuce and Red PomPom are left to grow, they soak up nitrate and phosphate better than anything else!

Do you already have a refugium? If so, tell us how it has worked for your reef tank system! We love to hear our customers’ experiences!

Reader Interactions

Comments

  1. Eddie says

    January 1, 2023 at 2:48 pm

    Thanks for this series. This is gold and NO ONE has something like this out. I run triton on my system and I had such a hard time on tuning my system to get it to grow in the way I wanted it to and to have a solid pod population even while feeding 100ml of phyto in a 200g tank. I’ll be making adjustments to my fuge and trying again with pods

    Reply
  2. Alex says

    July 31, 2023 at 9:14 pm

    How does the Marco algae outcompete other nuance algae? My refugium is running pompom but it seems like GHA grows faster in there. I try my best to clean and remove it every week.

    Reply
    • Matheus Petrone says

      August 1, 2023 at 6:59 am

      It could be a variety of things which makes identifying the issue a little tricky. Is there any flow in your refugium? I know some people have had great luck getting rid of GHA in their refugium by tumbling their macro. Other than that, some people have had success by trying to focus their light mostly on their macro instead of the whole refugium. Once the pom pom is matured, it will start out competing the GHA.

      Reply

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Related Posts

How hard is it to keep a refugium?

Adding a refugium to the reef tank system can be a game changer for some reef keepers! Most experienced hobbyists agree that a refugiums’ natural

Read More about How hard is it to keep a refugium?

The Ultimate Housekeepers

We at AlgaeBarn love clean-up crew critters and microorganisms, so welcome to the ultimate housekeeping celebration! At AlgaeBarn, we are highlighting our

Read More about The Ultimate Housekeepers

Bulletproof Refugiums: Biodiversity

Welcome back to our discussion on building bulletproof refugiums! In the last few weeks, we have received a lot of questions here at AlgaeBarn about

Read More about Bulletproof Refugiums: Biodiversity

Didn't find what you were looking for?

Browse the AlgaeLab by Category

  • Advanced Education
  • Beginners Education
  • CADE Aquariums
  • Captive Bred Fish
  • Clean Up Crew
  • Company News
  • Copepods
  • Corals
  • Freshwater
  • Freshwater Aquariums
  • Intermediate Education
  • Invertebrates
  • Live foods
  • Macroalgae
  • Our Oceans
  • Phytoplankton
  • Product Info
  • Refugium Education
  • Rock and Substrate
  • Saltwater Aquariums
  • Wholesale

Company

  • About Us
  • The AlgaeLab Blog
  • Our Team
  • Careers
  • FAQ

Get in Touch

  • Contact Us
  • AOA Claim Form
  • Press Inquiries
  • Call Us: 772-444-7637

Policies

  • Legendary AOA Guarantee
  • Terms & Conditions
  • Privacy Policy
  • Accessibility Statement

Other

  • Store Locator
  • Wholesale & B2B inquired
  • Business Location

Subscribe to our Newsletter

Join our mission to build a more sustainable aquarium hobby, one tank at a time!

Copyright 2025, AlgaeBarn LLC - Live Copepods and Phytoplankton

1
BIOTA White Polyp Toadstool
1
1$70
Have a promo code? Click here.

Subtotal$70
Proceed to checkout